6.  Jiro Kondo．
“Crystallographic studies of the ribosomal A-site molecular switches by using model RNA oligomers”
In Eric Ennifar (eds.), Nucleic Acid Crystallography : Methods and Protocols (Methods in Molecular Biology).
Springer, pp. 315-327. (2015).

5.  近藤次郎．
「RNAの構造研究」
日本結晶学会「日本の結晶学(II)」出版編集委員会編．「日本の結晶学(II)　-その輝かしい発展-」
日本結晶学会，pp. 220-221. (2014).

4.  Jiro Kondo, Claude Sauter & Benoit Masquida．
“RNA crystallization”
In Roland K. Hartmann, Albrecht Bindereif, Astrid Schon & Eric Westhof (eds.), Handbook of RNA Biochemistry, second edition.
Wiley VHC, pp. 481-498. (2014).

3.  Jiro Kondo & Eric Westhof.
“Aminoglycoside antibiotics: structural decoding of inhibitors targeting the ribosomal decoding A site”
In Claudio O. Gualerzi, Letizia Brandi, Attilio Fabbretti & Cynthia L. Pon (eds.), Antibiotics: Targets, Mechanisms and Resistance.
Wiley VHC, pp. 453-470. (2013).

2.  Jiro Kondo & Eric Westhof.
“Structural comparisons between prokaryotic and eukaryotic ribosomal decoding A sites free and complexed with aminoglycosides”
In Dev P. Arya (eds.), Aminoglycoside Antibiotics: From chemical biology to drug discovery, second edition.
John Wiley & Sons, Inc, pp. 209-223. (2007).

1.  近藤次郎，竹中章郎．
「核酸の結晶調製」
（独）日本学術振興会回折構造生物169委員会　坂部知平監修，相原茂夫編著「タンパク質の結晶化－回折構造生物学のために－」
京都大学学術出版会，pp. 132-146. (2005).

10.   近藤次郎．
「DNAナノメディシンのStructure-Based Design」
月刊化学工業, 27, 28-36. (2016).

9.   近藤次郎．
「核酸構造生物学の最前線」
SOPHIA SCI-TECH 上智大学理工学振興会会報, 27, 2-7. (2016).

8.   近藤次郎．
「ノンコーディング核酸の「動き」を見て「働き」を理解する」
日本RNA学会会報, 36, 12-14. (2015).

7.   近藤次郎．
「核酸構造生物学の創薬・ナノ材料科学への展開」
日本化学会・生体機能関連化学部会ニュースレター, 29 (4), 15-18. (2015).

6.   近藤次郎．
「リボソームの分子進化－AサイトRNA分子スイッチの動きからの考察」
実験医学増刊号, 31, 1011-1017. (2013).

5.   近藤次郎．
「リボソームの活性部位にあるRNA分子スイッチの“動き”＝“はたらき”を探る」
蛋白質核酸酵素, 54, 1356-1362. (2009).

4.   近藤次郎．
「リボソームＡサイト分子スイッチのＸ線結晶解析」 （日本結晶学会進歩賞受賞論文）
日本結晶学会誌, 51, 145-152. (2009).

3.   近藤次郎，Eric Westhof, 竹中章郎．
「分子スイッチとして機能するノンコーディングDNA/RNAのＸ線解析」
Photon Factory News, 26, 22-27. (2008).

2.   近藤次郎，竹中章郎．
「DNAの八重らせん構造およびその開裂四重鎖構造とそれらの生物学的意義」
日本結晶学会誌, 46, 345-351. (2004).

1.   近藤次郎，竹中章郎．
「DNA二重らせん構造50年後の新展開：DNA鎖の新しい会合様式と特殊塩基の役割」
構造生物, 9, 1-19. (2003).

24.  Jiro Kondo, Tom Yamada, Chika Hirose, Itaru Okamoto, Yoshiyuki Tanaka & Akira Ono.
“Crystal structure of metallo-DNA duplex containing T-Hg(II)-T base pairs”
Acta Crystallogr., A70. C1375. (2014).

23.  Hiroki Kanazawa & Jiro Kondo.
“Crystal structure of unusual RNA duplex containing strontium ion binding motif”
Acta Crystallogr., A70. C1378. (2014).

22.  Jiro Kondo & Eric Westhof.
“Crystal structures of the bacterial, mitochondrial and cytoplasmic A-site molecular switches”
Acta Crystallogr., A64. C297-298. (2008).

21.  Yoshiteru Sato, Kenta Mitomi, Hiromu Sugiyama, Shimizu Satoru, Ella Czarina Magat Juan, Jiro Kondo & Akio Takénaka.
“Multiplex formation of repetitive sequences d([G]nA)m through non-WC pairings: crystal structure of d(gcGAGGGAgc)”
Nucleic Acids Symposium Series, 50, 39-40. (2006).

20.  Satoru Shimizu, Tomonori Kobuna, Tomoko Sunami, Jiro Kondo & Akio Takénaka.
“Crystal structures of d(CGAA) and d(CGAAGC): parallel-stranded duplexes and their dimer”
Acta Crystallogr., A62, s134. (2006).

19.  Jiro Kondo, Alexandre Urzhumtsev & Eric Westhof.
“Crystal structures of Homo sapiens cytoplasmic A site with and without the antibiotic apramycin”
Acta Crystallogr., A62, s133. (2006).

18.  Yoshiteru Sato, Kenta Mitomi, Shimizu Satoru, Ella Czarina Magat Juan, Jiro Kondo & Akio Takénaka.
“Duplex with non-WC pairings: crystal structure of d(gcGAGGGAgc)”
Acta Crystallogr., A62, s18. (2006).

17.  Jiro Kondo, Boris François, Alexandre Urzhumtsev & Eric Westhof.
“Crystallographic studies of Homo sapiens ribosomal decoding A site complexed with aminoglycosides”
Nucleic Acids Symposium Series, 49, 253-254. (2005).

16.  Kenta Mitomi, Jiro Kondo, Wataru Adachi, Shun-ichi Umeda, Kazuhiro Fujita, Tomoko Sunami, & Akio Takénaka.
“Octaplex formation of d(GCGAAAGC) with the double A-quartet”
Nucleic Acids Symposium Series, 49, 71-72. (2005).

15.  Ella Czarina Magat Juan, Jiro Kondo, Takanori Ito, Yoshihito Ueno, Akira Matsuda, & Akio Takénaka.
“X-Ray analyses of hybrid duplexes between antisense oligonucleotides containing 5-(N-aminohexyl) carbamoyl-2'-O-　methyluridine and their target RNAs”
Nucleic Acids Symposium Series, 49, 65-66. (2005).

14.  Jiro Kondo, Boris François, Alexandre Urzhumtsev & Eric Westhof.
“Crystallographic studies of Homo sapiens A-sites complexed with aminoglycosides”
Acta Crystallogr., A61, C219. (2005).

13.  Ella Czarina Magat Juan, Takeshi Kurihara, Jiro Kondo, Takanori Ito, Yoshihito Ueno, Akira Matsuda, & Akio Takénaka.
“Structural basis for antigene and antisense duplexes with modified nucleotides”
Acta Crystallogr., A61, C60. (2005).

12.  Ella Czarina Magat Juan, Takeshi Kurihara, Jiro Kondo, Takanori Ito, Yoshihito Ueno, Akira Matsuda & Akio Takénaka.
“X-Ray analyses of DNA duplexes containing 5-(N-aminohexyl) carbamoyl modifications”
Nucleic Acids Symposium Series, 48, 305-306. (2004).

11.  Kenta Mitomi, Ciengshin Tanashaya, Jiro Kondo & Akio Takénaka.
“Structural stability and length of I-motif of G-quartet in DNA octaplex”
Nucleic Acids Symposium Series, 48, 121-122. (2004).

10.  Jiro Kondo, Wataru Adachi, Shun-ichi Umeda, Kazuhiro Fujita, Tomoko Sunami & Akio Takénaka.
“Role of the base-stacked XYYX in forming multiple associations of the base-intercalated duplexes”
Acta Crystallogr., A60, s129. (2004).

9.      Wataru Adachi, Jiro Kondo, Kenta Mitomi, Ciengshin Tanashaya, Tomoko Sunami & Akio Takénaka.
“Mutants at the 4th and 5th positions of the sequence d(gcGXYAgc) suggest a variety of the DNA octaplex”
Acta Crystallogr., A60, s20. (2004).

8.      Jiro Kondo, Shun-ichi Umeda, Tomoko Sunami and Akio Takénaka.
“The octaplex structure of d(GCGAGAGC) with I-motif of guanine quartet, controlled by potassium concentration”
Nucleic Acids Res., Supplement 3, 223-224. (2003).

7.      Jiro Kondo, Shun-ichi Umeda, Kazuhiro Fujita, Tomoko Sunami & Akio Takénaka.
“The base-intercalated duplexes of d(GCGAXAGC) with mutation at X (X=G, T or C)”
Nucleic Acids Res., Supplement 3, 175-176. (2003).

6.      Tomoko Sunami, Jiro Kondo, Masaru Tsunoda, Takeshi Sekiguchi, Ichiro Hirao, Kimitsuna Watanabe, Kin-ichiro Miura & Akio Takénaka.
“X-ray structure of d(GCGAAGC); switching of partner for G:A pair in duplex form”
Nucleic Acids Res., Supplement 2, 181-182. (2002).

5.      Tomonori Kobuna, Tomoko Sunami, Jiro Kondo & Akio Takénaka.
“X-ray structure of d(CGAA), parallel-stranded DNA duplex with homo base pairs”
Nucleic Acids Res., Supplement 2, 179-180. (2002).

4.      Tomoko Sunami, Tomonori Kobuna, Jiro Kondo, Hirao Ichiro, Kimitsuna Watanabe, Kin-ichiro Miura & Akio Takénaka.
“Crystal structure of d(GCGAAAGCT) containing parallel-stranded duplex with homo base pairs and anti-parallel duplex with Watson-Crick base pairs”
Nucleic Acids Res., Supplement 2, 51-52. (2002).

3.      Jiro Kondo, Tomoko Sunami, Ichiro Hirao, Kin-ichiro Miura &Akio Takénaka.
“X-Ray analysis of d(GCGAACGC); intra-duplex and inter-duplex hand-in-pocket motifs”
Nucleic Acids Res., Supplement 1, 199-200. (2001).

2.      Tomoko Sunami, Jiro Kondo, Toshiyuki Chatake, Ichiro Hirao, Kimitsuna Watanabe, Kin-ichiro Miura & Akio Takénaka.
“X-ray analyses of d(GCGAAAGC) and d(GXGAAAGCT), where X=2'-deoxy-5- iodocytidine”
Nucleic Acids Res., Supplement 1, 191-192. (2001).

1.      Jiro Kondo & Akio Takénaka.
“Crystallization of the most active RNA-cleaving deoxyribozyme”
Nucleic Acids Symposium Series, 44, 201-202. (2000).